9.5 Breakcounts

A *_breakcount.bed.gz file is produced for each sample. Each row represents a break site (one or more adjacent breaks that have been merged).

Columns

Column	Description
chr	Chromosome of the break site.
start	Genomic start coordinate of the break site.
end	Genomic end coordinate of the break site.
plus_count	Number of breaks on the plus strand.
minus_count	Number of breaks on the minus strand.
count	Total number of breaks at the site — the sum of adjacent breaks from the same strand.