9.4 Breakends

A *_breakends.bed.gz file is produced for each sample. Each row represents a single break from a DSB within the cell population.

Columns

Column	Description
chr	Chromosome of the break.
start	Genomic start coordinate of the break.
end	Genomic end coordinate of the break.
read_name	Read name for the identified break.
mapping_quality_score	Mapping quality score for the identified break site.
strand	Strand on which the break occurred: + (positive) or - (negative).