9.1 Report

The report.html file provides a high-level summary of an INDUCE-seq Analysis run and is the first file to check after a run completes.

The report file is located at: <results_folder>/<execution_name>/Primary_Outputs/report.html

Report contents

Per-condition outputs

• Nomination list — see Nomination Lists.
• Mismatch plot(s) — see Homology-Based Outputs.
• Two breaksite plots per condition:
  • The site with the highest recurrency.
  • The site with the fewest mismatches to the guide. If no homology-based nominations were found, the site with the second-highest recurrency is shown instead.

Workflow warnings and errors

A table summarising all warnings and errors encountered during the execution. Use this section to:

• Troubleshoot issues in sample or nuclease manifests.
• Identify why a sample or condition was excluded from an execution.

Warning

A successful execution status does not guarantee correct results. If incorrect manifests were supplied, errors appear here rather than causing a pipeline failure.

QC plots and Break QC plots

See QC Plots.