11.1 Example Folder Structure

Use the following structure when creating folders or adding experiment data. Maintaining a consistent layout makes results easier to navigate and manage across multiple runs.

Experiment_1/
├── Laboratory_data/
│   ├── FASTQs/
│   └── Sample_lab_metrics
├── Execution_inputs/
│   ├── Sample_manifest
│   └── Nuclease_manifest
├── Execution_1_run_results/
└── Execution_2_run_results/

Experiment_2/
├── Laboratory_data/
│   ├── FASTQs/
│   └── Sample_lab_metrics
├── Execution_inputs/
│   ├── Sample_manifest
│   └── Nuclease_manifest
├── Execution_1_run_results/
└── Execution_2_run_results/